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Friday, February 11, 2011

New Solar Cell Self-Repairs Like Natural Plant Systems


Researchers are creating a new type of solar cell designed to self-repair like natural photosynthetic systems in plants by using carbon nanotubes and DNA, an approach aimed at increasing service life and reducing cost.
Jong Hyun Choi, an assistant professor of mechanical 
engineering at Purdue, and doctoral student Benjamin 
Baker use fluorescent imaging to view a carbon nanotube. 
Their research is aimed at creating a new type of solar 
cell designed to self-repair like natural photosynthetic 
systems. The approach might enable researchers 
to increase the service life and reduce costs for 
photoelectrochemical cells, which convert sunlight 
into electricity. (Credit: Purdue University 
photo/Mark Simons)

"We've created artificial photosystems using optical nanomaterials to harvest solar energy that is converted to electrical power,"said Jong Hyun Choi, an assistant professor of mechanical engineering at Purdue University.

The design exploits the unusual electrical properties of structures called single-wall carbon nanotubes, using them as "molecular wires in light harvesting cells," said Choi, whose research group is based at the Birck Nanotechnology and Bindley Bioscience centers at Purdue's Discovery Park.

"I think our approach offers promise for industrialization, but we're still in the basic research stage," he said.

Photoelectrochemical cells convert sunlight into electricity and use an electrolyte -- a liquid that conducts electricity -- to transport electrons and create the current. The cells contain light-absorbing dyes called chromophores, chlorophyll-like molecules that degrade due to exposure to sunlight.

"The critical disadvantage of conventional photoelectrochemical cells is this degradation," Choi said.

The new technology overcomes this problem just as nature does: by continuously replacing the photo-damaged dyes with new ones.

"This sort of self-regeneration is done in plants every hour," Choi said.

The new concept could make possible an innovative type of photoelectrochemical cell that continues operating at full capacity indefinitely, as long as new chromophores are added.

Findings were detailed in a November presentation during the International Mechanical Engineering Congress and Exhibition in Vancouver. The concept also was unveiled in an online article (http://spie.org/x41475.xml?ArticleID=x41475) featured on the Web site for SPIE, an international society for optics and photonics.

The talk and article were written by Choi, doctoral students Benjamin A. Baker and Tae-Gon Cha, and undergraduate students M. Dane Sauffer and Yujun Wu.

The carbon nanotubes work as a platform to anchor strands of DNA. The DNA is engineered to have specific sequences of building blocks called nucleotides, enabling them to recognize and attach to the chromophores.

"The DNA recognizes the dye molecules, and then the system spontaneously self-assembles," Choi said

When the chromophores are ready to be replaced, they might be removed by using chemical processes or by adding new DNA strands with different nucleotide sequences, kicking off the damaged dye molecules. New chromophores would then be added.

Two elements are critical for the technology to mimic nature's self-repair mechanism: molecular recognition and thermodynamic metastability, or the ability of the system to continuously be dissolved and reassembled.

The research is an extension of work that Choi collaborated on with researchers at the Massachusetts Institute of Technology and the University of Illinois. The earlier work used biological chromophores taken from bacteria, and findings were detailed in a research paper published in November in the journal Nature Chemistry (http://www.nature.com/nchem/journal/v2/n11/abs/nchem.822.html).

However, using natural chromophores is difficult, and they must be harvested and isolated from bacteria, a process that would be expensive to reproduce on an industrial scale, Choi said.

"So instead of using biological chromophores, we want to use synthetic ones made of dyes called porphyrins," he said.

Photosynthesis III: Photosynthetic Membranes and Light Harvesting Systems (Encyclopedia of Plant Physiology) (Volume 3)

Photosynthetic Light-Harvesting Systems: Organization and Function. Proceedings of an International Workshop October 12-16, 1987. Freising, Fed. Rep.

Monday, February 7, 2011

Brain's Electrical Fields: Neural Communication



The brain -- awake and sleeping -- is awash in electrical activity, and not just from the individual pings of single neurons communicating with each other. In fact, the brain is enveloped in countless overlapping electric fields, generated by the neural circuits of scores of communicating neurons. The fields were once thought to be an "epiphenomenon, a 'bug' of sorts, occurring during neural communication," says neuroscientist Costas Anastassiou, a postdoctoral scholar in biology at the California Institute of Technology (Caltech).
Ephaptic coupling leads to coordinated spiking 
of nearby neurons, as measured using a 12-pipette 
electrophysiology setup developed in the laboratory of 
coauthor Henry Markram. (Credit: Image from 
Figure 4 in Anastassiou et., Nature Neuroscience, 2011)


New work by Anastassiou and his colleagues, however, suggests that the fields do much more -- and that they may, in fact, represent an additional form of neural communication.

"In other words," says Anastassiou, the lead author of a paper about the work appearing in the journal Nature Neuroscience, "while active neurons give rise to extracellular fields, the same fields feed back to the neurons and alter their behavior," even though the neurons are not physically connected -- a phenomenon known as ephaptic coupling. "So far, neural communication has been thought to occur at localized machines, termed synapses. Our work suggests an additional means of neural communication through the extracellular space independent of synapses."

Extracellular electric fields exist throughout the living brain, though they are particularly strong and robustly repetitive in specific brain regions such as the hippocampus, which is involved in memory formation, and the neocortex, the area where long-term memories are held. "The perpetual fluctuations of these extracellular fields are the hallmark of the living and behaving brain in all organisms, and their absence is a strong indicator of a deeply comatose, or even dead, brain," Anastassiou explains.

Previously, neurobiologists assumed that the fields were capable of affecting -- and even controlling -- neural activity only during severe pathological conditions such as epileptic seizures, which induce very strong fields. Few studies, however, had actually assessed the impact of far weaker -- but very common -- non-epileptic fields. "The reason is simple," Anastassiou says. "It is very hard to conduct an in vivo experiment in the absence of extracellular fields," to observe what changes when the fields are not around.

To tease out those effects, Anastassiou and his colleagues, including Caltech neuroscientist Christof Koch, the Lois and Victor Troendle Professor of Cognitive and Behavioral Biology and professor of computation and neural systems, focused on strong but slowly oscillating fields, called local field potentials (LFP), that arise from neural circuits composed of just a few rat brain cells. Measuring those fields and their effects required positioning a cluster of tiny electrodes within a volume equivalent to that of a single cell body -- and at distances of less than 50 millionths of a meter from one another.

"Because it had been so hard to position that many electrodes within such a small volume of brain tissue, the findings of our research are truly novel," Anastassiou says. Previously, he explains, "nobody had been able to attain this level of spatial and temporal resolution."

An "unexpected and surprising finding was how already very weak extracellular fields can alter neural activity," he says. "For example, we observed that fields as weak as one millivolt per millimeter robustly alter the firing of individual neurons, and increase the so-called "spike-field coherence" -- the synchronicity with which neurons fire with relationship to the field."In the mammalian brain, we know that extracellular fields may easily exceed two to three millivolts per millimeter. Our findings suggest that under such conditions, this effect becomes significant."

What does that mean for brain computation? "Neuroscientists have long speculated about this," Anastassiou says. "Increased spike-field coherency may substantially enhance the amount of information transmitted between neurons as well as increase its reliability. Moreover, it has been long known that brain activity patterns related to memory and navigation give rise to a robust LFP and enhanced spike-field coherency. We believe ephaptic coupling does not have one major effect, but instead contributes on many levels during intense brain processing."

Can external electric fields have similar effects on the brain? "This is an interesting question," Anastassiou says. "Indeed, physics dictates that any external field will impact the neural membrane. Importantly, though, the effect of externally imposed fields will also depend on the brain state. One could think of the brain as a distributed computer -- not all brain areas show the same level of activation at all times.

"Whether an externally imposed field will impact the brain also depends on which brain area is targeted. During epileptic seizures, pathological fields can be as strong as 100 millivolts per millimeter¬ -- such fields strongly entrain neural firing and give rise to super-synchronized states." And that, he adds, suggests that electric field activity -- even from external fields -- in certain brain areas, during specific brain states, may have strong cognitive and behavioral effects.

Ultimately, Anastassiou, Koch, and their colleagues would like to test whether ephaptic coupling affects human cognitive processing, and under which circumstances. "I firmly believe that understanding the origin and functionality of endogenous brain fields will lead to several revelations regarding information processing at the circuit level, which, in my opinion, is the level at which percepts and concepts arise," Anastassiou says. "This, in turn, will lead us to address how biophysics gives rise to cognition in a mechanistic manner -- and that, I think, is the holy grail of neuroscience."

The work in the paper was supported by the Engineering Physical Sciences Research Council, the Sloan-Swartz Foundation, the Swiss National Science Foundation, EU Synapse, the National Science Foundation, the Mathers Foundation, and the National Research Foundation of Korea.



Saturday, February 5, 2011

'Tall Order' Sunlight-to-Hydrogen System Works, Neutron Analysis Confirms


Researchers at the Department of Energy's Oak Ridge National Laboratory have developed a biohybrid photoconversion system -- based on the interaction of photosynthetic plant proteins with synthetic polymers -- that can convert visible light into hydrogen fuel.

Neutron scattering analysis performed at DOE's Oak Ridge 
National Laboratory reveals the lamellar structure of a 
hydrogen-producing, biohybrid composite material formed 
by the self-assembly of naturally occurring, light harvesting 
proteins with polymers. (Credit: Image courtesy of 
DOE/Oak Ridge National Laboratory)

Photosynthesis, the natural process carried out by plants, algae and some bacterial species, converts sunlight energy into chemical energy and sustains much of the life on earth. Researchers have long sought inspiration from photosynthesis to develop new materials to harness the sun's energy for electricity and fuel production.

In a step toward synthetic solar conversion systems, the ORNL researchers have demonstrated and confirmed with small-angle neutron scattering analysis that light harvesting complex II (LHC-II) proteins can self-assemble with polymers into a synthetic membrane structure and produce hydrogen.

The researchers envision energy-producing photoconversion systems similar to photovoltaic cells that generate hydrogen fuel, comparable to the way plants and other photosynthetic organisms convert light to energy.

"Making a, self-repairing synthetic photoconversion system is a pretty tall order. The ability to control structure and order in these materials for self-repair is of interest because, as the system degrades, it loses its effectiveness," ORNL researcher Hugh O'Neill, of the lab's Center for Structural Molecular Biology, said.

"This is the first example of a protein altering the phase behavior of a synthetic polymer that we have found in the literature. This finding could be exploited for the introduction of self-repair mechanisms in future solar conversion systems," he said.

Small angle neutron scattering analysis performed at ORNL's High Flux Isotope Reactor (HFIR) showed that the LHC-II, when introduced into a liquid environment that contained polymers, interacted with polymers to form lamellar sheets similar to those found in natural photosynthetic membranes.

The ability of LHC-II to force the assembly of structural polymers into an ordered, layered state -- instead of languishing in an ineffectual mush -- could make possible the development of biohybrid photoconversion systems. These systems would consist of high surface area, light-collecting panes that use the proteins combined with a catalyst such as platinum to convert the sunlight into hydrogen, which could be used for fuel.

The research builds on previous ORNL investigations into the energy-conversion capabilities of platinized photosystem I complexes -- and how synthetic systems based on plant biochemistry can become part of the solution to the global energy challenge.

"We're building on the photosynthesis research to explore the development of self-assembly in biohybrid systems. The neutron studies give us direct evidence that this is occurring," O'Neill said.

The researchers confirmed the proteins' structural behavior through analysis with HFIR's Bio-SANS, a small-angle neutron scattering instrument specifically designed for analysis of biomolecular materials.

"Cold source" neutrons, in which energy is removed by passing them through cryogenically chilled hydrogen, are ideal for studying the molecular structures of biological tissue and polymers.

The LHC-II protein for the experiment was derived from a simple source: spinach procured from a local produce section, then processed to separate the LHC-II proteins from other cellular components. Eventually, the protein could be synthetically produced and optimized to respond to light.

O'Neill said the primary role of the LHC-II protein is as a solar collector, absorbing sunlight and transferring it to the photosynthetic reaction centers, maximizing their output. "However, this study shows that LHC-II can also carry out electron transfer reactions, a role not known to occur in vivo," he said.
The research team, which came from various laboratory organizations including its Chemical Sciences Division, Neutron Scattering Sciences Division, the Center for Structural Molecular Biology and the Center for Nanophase Materials Sciences, consisted of O'Neill, William T. Heller, and Kunlun Hong, all of ORNL; Dimitry Smolensky of the University of Tennessee; and Mateus Cardoso, a former postdoctoral researcher at ORNL now of the Laboratio Nacional de Luz Sincrotron in Brazil.

"That's one of the nice things about working at a national laboratory. Expertise is available from a variety of organizations," O'Neill said.

The work, published in the journal Energy & Environmental Science, was supported with Laboratory-Directed Research and Development funding. HFIR is supported by the DOE Office of Science.

Thursday, February 3, 2011

Human Genome's Breaking Points: Genetic Sequence of Large-Scale Differences Between Human Genomes


A detailed analysis of data from 185 human genomes sequenced in the course of the 1000 Genomes Project, by scientists at the European Molecular Biology Laboratory (EMBL) in Heidelberg, Germany, in collaboration with researchers at the Wellcome Trust Sanger Institute in Cambridge, UK, as well as the University of Washington and Harvard Medical School, both in the USA, has identified the genetic sequence of an unprecedented 28 000 structural variants (SVs) -- large portions of the human genome which differ from one person to another.

The work, published in Nature, could help find the genetic causes of some diseases and also begins to explain why certain parts of the human genome change more than others.
Scientists have identified the genetic sequence of an unprecedented 28,000 structural variants -- large portions of the human genome which differ from one person to another. (Credit: iStockphoto/Andrey Prokhorov)


The international team of scientists identified over a thousand SVs that disrupt the sequence of one or more genes. These gene-altering mutations may be linked to diseases, so knowing the exact genetic sequence of these variations will help clinical geneticists to narrow down their searches for disease-causing mutations.

"Knowing the exact genetic sequence of SVs and their context in the genome could help find the genetic causes for as-yet unexplained diseases," says Jan Korbel, who led the research at EMBL: "this may help us understand why some people remain healthy until old age whereas others develop diseases early in their lives."

This unprecedented catalogue of large-scale genetic variants also sheds light on why some parts of the genome mutate more frequently than others. The scientists found that deletions, where genetic material is lost, and insertions, where it is gained, tend to happen in different places in the genome and through different molecular processes. For instance, large-scale deletions are more likely to occur in regions where DNA often breaks and has to be put back together, as 'chunks' of genetic material can be lost in the process.

"We found 51 hotspots where certain SVs, such as large deletions, appear to occur particularly often" Korbel says: "Six of those hotspots are in regions known to be related to genetic conditions such as Miller-Dieker syndrome, a congenital brain disease that can lead to infant death."

Previous research had already linked SVs -- also called copy-number variants -- to many genetic conditions, such as colour-blindness, schizophrenia, and certain forms of cancer. However, because of their large size and complex DNA sequence, SVs were difficult to identify. In this study, the researchers overcame these difficulties, developing novel computational approaches that allowed them to pinpoint the exact locations of these large-scale variations in the genome, broadening the potential scope of future disease studies.

"There are many structural variants in everyone's genomes and they are increasingly being associated with various aspects of human health" says Charles Lee, a clinical cytogeneticist and associate professor at Harvard Medical School and Brigham and Women's Hospital, and joint leader of the study: "It is important to be able to identify and comprehensively characterize these genetic variants using state-of-the-art DNA sequencing technologies."

Data from this study is being made publicly available to the scientific community through the 1000 Genomes Project, an international public-private consortium to build the most detailed map of human genetic variation to date. The 1000 Genomes Project aims to sequence 2500 whole genomes by the end of 2012, resulting, by far, in the largest collection of human genomes to date.

Friday, January 28, 2011

New Way to Harvest Energy from Sunlight


Professor Richard Watt and his chemistry students suspected that a common protein could potentially react with sunlight and harvest its energy -- similar to what chlorophyll does during photosynthesis.
BYU chemistry professor Richard Watt. (Credit: Image courtesy of Brigham Young University)

The story of how they proved it sounds as colorful as the legend of the leprechaun who hid his pot of gold at the end of the rainbow.

They started with citric acid from oranges and mixed it with the protein. Next they dissolved gold powder into the solution. Then they put vials of the yellow-colored mixture in direct sunlight and crossed their fingers in the hope that it would turn purple.

Here's the reason why: If it turned purple, that would signal that the gold atoms had received electrons and used the donated energy to bunch together as small, purple-colored nanoparticles. And that would mean that the protein used the sunlight to excite the citric acid and trigger a transfer of energy.

While direct sunlight did the trick in about 20 minutes, a high-powered tungsten mercury lamp worked much faster.

"We set the system up, turned on the light, and the solution turned purple," Watt said. "We knew that we'd proved the concept."

The beauty of this experiment lies not in its colors -- unless, of course, you're thinking of it as a potential "green" energy source that keeps the environment clean.

The BYU researchers published their experiments in the Journal of Nanoparticle Research. The final step of this project will involve connecting the protein to an electrode to channel the energy into a battery or fuel cell. The BYU chemists will partner with Jae-Woo Kim of the National Institute of Aerospace for this next stage of the work.

Professor Watt's pedigree includes a post-doc at Princeton, a father who developed a fuel cell that runs on sugar and weed-killer and a more distant ancestor credited with inventing the first practical steam engine. That ancestor is also the Scottish engineer for whom the unit of power "watt" is named.

Co-authors on the new study include BYU graduate Jeremiah Keyes, grad student Robert Hilton and Jeff Farrer, who runs an electron microscope lab at BYU.

Thursday, January 20, 2011

New Reactor to Make Fuel from Sunlight


Using a common metal most famously found in self-cleaning ovens, Sossina Haile hopes to change our energy future. The metal is cerium oxide -- or ceria -- and it is the centerpiece of a promising new technology developed by Haile and her colleagues that concentrates solar energy and uses it to efficiently convert carbon dioxide and water into fuels.
Sossina Haile and William Chueh stand next to the 
benchtop thermochemical reactor used to screen 
materials for implementation on the solar reactor. 
(Credit: Courtesy of Caltech)
Solar energy has long been touted as the solution to our energy woes, but while it is plentiful and free, it can't be bottled up and transported from sunny locations to the drearier -- but more energy-hungry -- parts of the world. The process developed by Haile -- a professor of materials science and chemical engineering at the California Institute of Technology (Caltech) -- and her colleagues could make that possible.

The researchers designed and built a two-foot-tall prototype reactor that has a quartz window and a cavity that absorbs concentrated sunlight. The concentrator works "like the magnifying glass you used as a kid" to focus the sun's rays, says Haile.

At the heart of the reactor is a cylindrical lining of ceria. Ceria -- a metal oxide that is commonly embedded in the walls of self-cleaning ovens, where it catalyzes reactions that decompose food and other stuck-on gunk -- propels the solar-driven reactions. The reactor takes advantage of ceria's ability to "exhale" oxygen from its crystalline framework at very high temperatures and then "inhale" oxygen back in at lower temperatures.

"What is special about the material is that it doesn't release all of the oxygen. That helps to leave the framework of the material intact as oxygen leaves," Haile explains. "When we cool it back down, the material's thermodynamically preferred state is to pull oxygen back into the structure."

Specifically, the inhaled oxygen is stripped off of carbon dioxide (CO2) and/or water (H2O) gas molecules that are pumped into the reactor, producing carbon monoxide (CO) and/or hydrogen gas (H2). H2 can be used to fuel hydrogen fuel cells; CO, combined with H2, can be used to create synthetic gas, or "syngas," which is the precursor to liquid hydrocarbon fuels. Adding other catalysts to the gas mixture, meanwhile, produces methane. And once the ceria is oxygenated to full capacity, it can be heated back up again, and the cycle can begin anew.

For all of this to work, the temperatures in the reactor have to be very high -- nearly 3,000 degrees Fahrenheit. At Caltech, Haile and her students achieved such temperatures using electrical furnaces. But for a real-world test, she says, "we needed to use photons, so we went to Switzerland." At the Paul Scherrer Institute's High-Flux Solar Simulator, the researchers and their collaborators -- led by Aldo Steinfeld of the institute's Solar Technology Laboratory -- installed the reactor on a large solar simulator capable of delivering the heat of 1,500 suns.

In experiments conducted last spring, Haile and her colleagues achieved the best rates for CO2 dissociation ever achieved, "by orders of magnitude," she says. The efficiency of the reactor was uncommonly high for CO2 splitting, in part, she says, "because we're using the whole solar spectrum, and not just particular wavelengths." And unlike in electrolysis, the rate is not limited by the low solubility of CO2 in water. Furthermore, Haile says, the high operating temperatures of the reactor mean that fast catalysis is possible, without the need for expensive and rare metal catalysts (cerium, in fact, is the most common of the rare earth metals -- about as abundant as copper).

In the short term, Haile and her colleagues plan to tinker with the ceria formulation so that the reaction temperature can be lowered, and to re-engineer the reactor, to improve its efficiency. Currently, the system harnesses less than 1% of the solar energy it receives, with most of the energy lost as heat through the reactor's walls or by re-radiation through the quartz window. "When we designed the reactor, we didn't do much to control these losses," says Haile. Thermodynamic modeling by lead author and former Caltech graduate student William Chueh suggests that efficiencies of 15% or higher are possible.

Ultimately, Haile says, the process could be adopted in large-scale energy plants, allowing solar-derived power to be reliably available during the day and night. The CO2 emitted by vehicles could be collected and converted to fuel, "but that is difficult," she says. A more realistic scenario might be to take the CO2 emissions from coal-powered electric plants and convert them to transportation fuels. "You'd effectively be using the carbon twice," Haile explains. Alternatively, she says, the reactor could be used in a "zero CO2 emissions" cycle: H2O and CO2 would be converted to methane, would fuel electricity-producing power plants that generate more CO2 and H2O, to keep the process going.

The work was funded by the National Science Foundation, the State of Minnesota Initiative for Renewable Energy and the Environment, and the Swiss National Science Foundation.
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Wednesday, January 19, 2011

Birds of a feather? Your genes help you select friends


Vices attract while virtues repel people, according to a new study, which has found that genetic make-up plays a part in who one chooses as friends.

Researchers have found that people partly choose their friends by their genes especially those that have a big impact on their behaviour sometimes it can be a case of "opposites attract'' while sometimes "birds of a feather flock together". To research the conclusion, a team, led by James Fowler at University of California, used data from two large health studies to search for genetic links to friendship.
OF HUMAN BONDAGE

The researchers identified genetic markers, or genotypes, in six specific genes and looked at how often they occurred among friends. They found two clear examples where "birds of a feather flock together" and "opposites attract". The first involved a variant of the gene DRD2 which has been associated with alcoholism. People who carried the DRD2 genotype tended to befriend others with the same marker. Those who lacked the marker were also more likely to be friends with one another.

A less obvious opposite association was seen between people with a version of the gene CYP2A6linked to having an "open" personality. In this case, people with the genetic marker gravitated towards individuals who did not have it.

The findings, published in the 'Proceedings of the National Academy of Sciences' journal, remained significant after taking account of people's tendency to form "local" friendships within the same geographical area.

"An important implication of these results is that genetic structure in human populations may result not only from the formation of reproductive unions, but also from the formation of friendship unions within• a population," said the researchers in a statement on Tuesday.

Human evolution may to some extent have been shaped by interactions between genes and friendship choices." The human evolutionary environment is not limited to the physical and biological environment, but also includes the social environment, which may itself be an evolutionary force," they Said.

Tuesday, January 18, 2011

LCD Projector Used to Control Brain and Muscles of Tiny Organisms Such as Worms


Researchers are using inexpensive components from ordinary liquid crystal display (LCD) projectors to control the brain and muscles of tiny organisms, including freely moving worms. Red, green and blue lights from a projector activate light-sensitive microbial proteins that are genetically engineered into the worms, allowing the researchers to switch neurons on and off like light bulbs and turn muscles on and off like engines.
Hang Lu, an associate professor in the School of Chemical 
& Biomolecular Engineering at Georgia Tech, and her 
graduate students Jeffrey Stirman (left) and Matthew Crane 
are using inexpensive LCD projectors to control the brain 
and muscles of tiny organisms, including freely moving 
worms. (Credit: Georgia Tech/Gary Meek)

Use of the LCD technology to control small animals advances the field of optogenetics -- a mix of optical and genetic techniques that has given researchers unparalleled control over brain circuits in laboratory animals. Until now, the technique could be used only with larger animals by placement of an optical fiber into an animal's brain, or required illumination of an animal's entire body.

A paper published Jan. 9 in the advance online edition of the journal Nature Methods describes how the inexpensive illumination technology allows researchers to stimulate and silence specific neurons and muscles of freely moving worms, while precisely controlling the location, duration, frequency and intensity of the light.

"This illumination instrument significantly enhances our ability to control, alter, observe and investigate how neurons, muscles and circuits ultimately produce behavior in animals," said Hang Lu, an associate professor in the School of Chemical & Biomolecular Engineering at the Georgia Institute of Technology.
Lu and graduate students Jeffrey Stirman and Matthew Crane developed the tool with support from the National Institutes of Health and the Alfred P. Sloan Foundation.

The illumination system includes a modified off-the-shelf LCD projector, which is used to cast a multi-color pattern of light onto an animal. The independent red, green and blue channels allow researchers to activate excitable cells sensitive to specific colors, while simultaneously silencing others.

"Because the central component of the illumination system is a commercially available projector, the system's cost and complexity are dramatically reduced, which we hope will enable wider adoption of this tool by the research community," explained Lu.

By connecting the illumination system to a microscope and combining it with video tracking, the researchers are able to track and record the behavior of freely moving animals, while maintaining the lighting in the intended anatomical position. When the animal moves, changes to the light's location, intensity and color can be updated in less than 40 milliseconds.

Once Lu and her team built the prototype system, they used it to explore the "touch" circuit of the worm Caenorhabditis elegans by exciting and inhibiting its mechano-sensory and locomotion neurons. Alexander Gottschalk, a professor in the Johann Wolfgang Goethe-University Frankfurt Institute of Biochemistry in Frankfurt, Germany, and his team provided the light-sensitive optogenetic reagents for the Georgia Tech experiments.

For their first experiment, the researchers illuminated the head of a worm at regular intervals while the animal moved forward. This produced a coiling effect in the head and caused the worm to crawl in a triangular pattern. In another experiment, the team scanned light along the bodies of worms from head to tail, which resulted in backward movement when neurons near the head were stimulated and forward movement when neurons near the tail were stimulated.

Additional experiments showed that the intensity of the light affected a worm's behavior and that several optogenetic reagents excited at different wavelengths could be combined in one experiment to understand circuit functions. The researchers were able to examine a large number of animals under a variety of conditions, demonstrating that the technique's results were both robust and repeatable.

"This instrument allowed us to control defined events in defined locations at defined times in an intact biological system, allowing us to dissect animal functional circuits with greater precision and nuance," added Lu.

While these proof-of-concept studies investigated the response of C. elegans to mechanical stimulation, the illumination system can also be used to evaluate responses to chemical, thermal and visual stimuli. Researchers can also use it to study a variety of neurons and muscles in other small animals, such as the zebrafish and fruit fly larvae.

"Experiments with this illumination system yield quantitative behavior data that cannot be obtained by manual touch assays, laser cell ablation, or genetic manipulation of neurotransmitters," said Lu.

Wednesday, January 12, 2011

Gesturing While Talking Helps Change Your Thoughts


Sometimes it’s almost impossible to talk without using your hands. These gestures seem to be important to how we think. They provide a visual clue to our thoughts and, a new theory suggests, may even change our thoughts by grounding them in action.
Sometimes it's almost impossible to talk without using your hands. These gestures seem to be important to how we think. They provide a visual clue to our thoughts and, a new theory suggests, may even change our thoughts by grounding them in action. (Credit: iStockphoto/Franz Pfluegl)

University of Chicago psychological scientists Sian Beilock and Susan Goldin-Meadow are bringing together two lines of research: Beilock’s work on how action affects thought and Goldin-Meadow’s work on gesture. After a chat at a conference instigated by Ed Diener, the founding editor of Perspectives on Psychological Science, they designed a study together to look at how gesture affects thought.

For the study, published in Psychological Science, a journal of the Association for Psychological Science, Beilock and Goldin-Meadow had volunteers solve a problem known as the Tower of Hanoi. It’s a game in which you have to move stacked disks from one peg to another. After they finished, the volunteers were taken into another room and asked to explain how they did it. (This is virtually impossible to explain without using your hands.) Then the volunteers tried the task again. But there was a trick: For some people, the weight of the disks had secretly changed, such that the smallest disk, which used to be light enough to move with one hand, now needed two hands.

People who had used one hand in their gestures when talking about moving the small disk were in trouble when that disk got heavier. They took longer to complete the task than did people who used two hands in their gestures—and the more one-handed gestures they used, the longer they took. This shows that how you gesture affects how you think; Goldin-Meadow and Beilock suggest that the volunteers had cemented how to solve the puzzle in their heads by gesturing about it (and were thrown off by the invisible change in the game).



In another version of the experiment, published in Perspectives in Psychological Science, the volunteers were not asked to explain their solution; instead, they solved the puzzle a second time before the disk weights were changed. But moving the disks didn’t affect performance in the way that gesturing about the disks did. The people who gestured did worse after the disk weights switched, but the people who moved the disks did not—they did just as well as before. “Gesture is a special case of action. You might think it would have less effect because it does not have a direct impact on the world,” says Goldin-Meadow. But she and Beilock think it may actually be having a stronger effect, “because gesturing about an act requires you to represent that act.” You aren’t just reaching out and handling the thing you’re talking about; you have to abstract from it, indicating it by a movement of your hands.

In the article published in Perspectives in Psychological Science, the two authors review the research on action, gesture, and thought. Gestures make thought concrete, bringing movement to the activity that’s going on in your mind.

This could be useful in education; Goldin-Meadow and Beilock have been working on helping children to understand abstract concepts in mathematics, physics, and chemistry by using gesture. “When you’re talking about angular momentum and torque, you’re talking about concepts that have to do with action,” Beilock says. “I’m really interested in whether getting kids to experience some of these actions or gesture about them might change the brain processes they use to understand these concepts.” But even in math where the concepts have little to do with action, gesturing helps children learn—maybe because the gestures themselves are grounded in action.

Tuesday, January 11, 2011

First romantic kiss is more memorable than losing virginity


Be it behind the bike sheds or at the school disco, you are more likely to remember your first romantic kiss with your partner than even loosing your virginity.
First romantic kiss

Scientists have claimed that most of us can recall 90% of the details of the experience a memory more vivid than losing their virginity, reports the Daily Mail. But, the art is so complex that scientist Sheril Kirshenbaum has written a book about it.

In 'The Science of Kissing: What Our Lips Are Telling Us', Kirshenbaum writes men see kissing "as a means to an end" and possibly with a "view to swapping other bodily fluids later." Women try to "extricate the significance of a relationship based on a single kiss and often that leads to miscommunication." Men are more aggressive kissers, as they are trying to pass on a "testosterone bomb" to a lover.

But, testosterone passed on during smaller, frequent kissing sessions stays in the body longer, andean push a woman to falling in love more quickly.

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